Tuesday, May 05, 2009

The Virus

Wonderful article ...
The 10 Genes of a Human Flu Virus, Furiously Evolving - Carl (The Loom) Zimmer - NYTimes.com
... The sheer number of viruses on Earth is beyond our ability to imagine. “In a small drop of water there are a billion viruses,” Dr. Wolkowicz said. Virologists have estimated that there are a million trillion trillion viruses in the world’s oceans.

Viruses are also turning out to be astonishingly diverse. Shannon Williamson of the J. Craig Venter Institute in Rockville, Md., has been analyzing the genes of ocean viruses. A tank of 100 to 200 liters of sea water may hold 100,000 genetically distinct viruses. “We’re just scratching the surface of virus diversity,” Dr. Williamson said. “I think we’re going to be continually surprised...
By what order of magnitude does the sum of their DNA exceed that of all multicellular animals?

The Way of the Palm - I'm a lapsed member

I've abandoned the Way of the Palm for the seductions of the iPhone, but reading this description I realize I was almost a charter member once ...

True believers: The biggest cults in tech | Adventures in IT - InfoWorld

When Jonathan Ezor walked into a J&R Music store in the fall of 1996 and encountered his first Pilot 1000, it wasn't exactly a religious experience, but it was life-altering. He immediately began speaking in tongues -- or, more accurately, writing in flawless Graffiti, the Pilot's handwriting recognition alphabet...

.. Ezor says he's owned seven Palm PDAs in his life (he currently uses a TX) ...

...You can identify true devotees because they're the ones standing around beaming contact info and free apps to each other through their Palms' IR ports, says Ezor....

..."I think the true believers are the ones who had the Pilot 1000 or 5000, who jumped on the Palm before it went mainstream," he says. "And the orthodox sect belongs to people who prefer Graffiti 1 over Graffiti 2...

I'm not sure I qualify as a true believer (I think the Palm III was my first), but I do think I had about 6-7 devices and I was definitely orthodox. Graffiti 2 was a grievous wound.

As a former member of the tribe, I have nothing but fond wishes for the Pre. In fact, I'm praying for it to put "the fear" into the heart of Apple, and force them to rethink their disdainful support for the "Four Paths of PIM Productivity (contacts, calendaring, tasks, notes).

I missed the Tao of Newton, but I was almost there. I'm so disappointed that they omitted the Flagellants of OS/2.

Thursday, April 30, 2009

The ideological roots of climate change nihilism

For many Americans, climate nihilism has become a core ideology ...
Anti-green economics - Paul Krugman Blog - NYTimes.com 
... I don’t especially mean to pick on Samuelson, but this column exemplifies a strange thing about the climate change debate. Opponents of a policy change generally believe that market economies are wonderful things, able to adapt to just about anything — anything, that is, except a government policy that puts a price on greenhouse gas emissions. Limits on the world supply of oil, land, water — no problem. Limits on the amount of CO2 we can emit — total disaster. 

Funny how that is.
No matter the question, the answer is always 'do nothing'. So 'do nothing' if the earth is cooling, 'do nothing' if the earth is warming, 'do nothing' if CO2 is warming the earth, 'do nothing' if it's all due to cosmic rays.

I'm trying to think of similar nihilism on the left. When did the right push for change, and the left irrationally deny the need for change?

Education comes to mind, but even there the left is not counseling nihilism.

The catalog of cell lines - as a book

This morning I arrived early for a student exam, and I found myself in a medical library for the first time in many years.

I strolled the neglected aisles. There's not much cause now to pull these old books out. There I found the "catalog of cell lines" ...



They appear to be bound dot matrix printouts; even in the early 1980s this was not really the stuff of books. It went on for a few years, then we come to a softcover, then a few desultory binders. Today there are many databases of cell lines; you can order any one of 3,400 for home delivery.

Once these were bound books that scholars pulled from shelves.

No, religion does not make you a better person

It's commonly claimed that religious belief is associated with good behavior.

That may be so, depending on how you define "good" ...
Survey: Support for terror suspect torture differs among the faithful - CNN.com
More than half of people who attend services at least once a week -- 54 percent -- said the use of torture against suspected terrorists is "often" or "sometimes" justified. Only 42 percent of people who "seldom or never" go to services agreed, according the analysis released Wednesday by the Pew Forum on Religion & Public Life.
White evangelical Protestants were the religious group most likely to say torture is often or sometimes justified -- more than six in 10 supported it. People unaffiliated with any religious organization were least likely to back it. Only four in 10 of them did...
In many allegedly Christian religions the chief deity tortures sinners not for an hour, nor for a month, but for all eternity. So if "good" is as "God does", then torture is good, indeed, godly.

Given the astounding amount of evangelical Protestant support for torture, I'm impressed that McCain came out against torture (though he later retreated into ambiguity).

I wonder what the comparable numbers are for Buddhists.

If I'm ever a prisoner of war, I'll take the secular humanist guard please.

Wednesday, April 29, 2009

More proof of Google's mere humantity

We have evidence Googlers are imperfect ...
Gordon's Notes: Proof that Google is mortal - Gmail Contacts: "The proof of Google's banality is the current version of Google Contacts, and particularly Google Contact Groups."
Here's more. Picasa Web Uploader for Mac has been around for at least a year.

The latest version still won't install in a non-admin account (hint - request privilege escalation!), and it still doesn't give a meaningful error message if you try.

Not just feet of clay. Google has clay to the knobby knees and more.

Tuesday, April 28, 2009

Interesting data on pandemic flu mortality

Interesting summary (but caveat below) ...

A Century of Flu Pandemics - Health Blog - WSJ

... There was the Spanish Flu of 1918, which this historical overview from the feds calls “the catastrophe against which all modern pandemics are measured.” Some 30% of the world’s inhabitants fell ill; there were an estimated 500,000 deaths in the U.S. alone.

The other major pandemics of the century were less severe. In the Asian Flu of 1957, some 70,000 people in the U.S. died. In the Hong Kong Flu outbreak of 1967, about 33,800 people died in this country.

Yes, those numbers are high. But consider this: In a typical year, some 36,000 Americans die of regular, garden-variety flu, and hundreds of thousands are hospitalized. Those are useful figures to keep in mind for a sense of context as the confirmed cases of swine flu continue to rise...

That's a reassuring number, but slightly misleading for several reasons.

  1. The US population in 1967 was 200 million, now we're at 300 million.
  2. We have immunizations and vastly better medical care than 1967, so our death rates should be much lower.
  3. Routine flu most often kills elderly frail people with a very limited lifespan. The big pandemics take the young.

It's worth remembering that influenza does kill a lot of people every year, but that shouldn't make us think that Hong Kong outbreak of 1967 was nothing special.

Monday, April 27, 2009

Terrific set of bicycle commuting tips

Via Ride Boldly: Alan Snel's: Let's Bust The Bike-Commuting Myths. The title is a bit misleading, it's a set of tips to mitigate common issues with bicycle commuting. Here are just a few of my favorites:

...3. It's too far
-- Try riding to work and taking mass transit home, then alternating the next day
-- Ride to a coworker's house and carpool to work...

...7. I have to dress up
-- Keep multiple sets of clothing at work; rotate them on days you drive
-- Have work clothes cleaned at nearby laundromats or dry cleaners
-- Pack clothes with you and change at work; try rolling clothes instead of folding...

8. It's raining
-- If you are at work, take transit or carpool to get home; ride home the next day...

There were a few silly ones however ...

9. The roads aren't safe
-- You are at no greater risk than driving a car

and

...Trips of 5 to 7 miles in urban areas take the same or less by car...

There is absolutely no way riding a bicycle on unsafe roads is as safe as driving in a car on the same roads. That's just nuts.  Also, the 5-7 miles claim is only true in highly congested urban areas; where I live a 7 mile car trip is about 1/4 the time required to transit from door to desk (Ok, so Lance Armstrong results may vary).

All Swine Flu all the time -- the WSJ page

Can't get enough news about the latest pandemic wannabe? The Wall Street Journal has your number: Swine Flu - WSJ.com.

I'm surprised it doesn't have a feed and tweeter. Maybe tomorrow.

You'd think after the SARS experience we'd have spent more money trying to figure out why the "same" virus [1] can be so lethal in some places (Hong Kong, Toronto) and so relatively benign everywhere else.

[1] One might debate if the word "same" is meaningful when applied to something as mutable as a virus (or a river, for fans of Zen).

Sunday, April 26, 2009

And now for the health care wars … compensation, round one

Them’s fighting words …

Doctor Shortage Proves Obstacle to Obama Goals - NYTimes.com

… Senator Max Baucus, a Montana Democrat and chairman of the Finance Committee, said Medicare payments were skewed against primary care doctors…

“Primary care physicians are grossly underpaid compared with many specialists,” said Mr. Baucus, who vowed to increase primary care payments as part of legislation to overhaul the health care system…

“Grossly underpaid” is rather strong, especially from the chairman of the Finance Committee.

There is an elephant in the room of physician compensation. The primary care physician supply can be increased by paying these physicians substantially more, but it can also be increased by paying specialists substantially less.

There are plenty of applications for medical school, and plenty of physicians entering practice. If we really want a different mix, we can do that fairly cheaply.

Android netbook – things start to get interesting again

The Netbook news has been boring lately. Lots of junky $500 machines running XP – viral fodder basically. Heck, that’s in range of a used MacBook. No news there, except that $25/machine XP licensing has torn a hole in Microsoft’s profit. Instead of making an insane profit they’re only making an obscene profit.

Things only get interesting when the crummy little buggers fall below $150. Anything else, short of a $250 5” diagonal iTouch from Apple, is boring.

So this report is interestingly only because it’s a marker of the drive to $150 …

Report: First Android Netbook to cost $250 | Crave - CNET

The Alpha 680, as the laptop is known as, is going through final testing at Guangzhou Skytone Transmission Technologies, Skytone co-founder Nixon White told the site.

The Netbook uses a 533MHz ARM 11 CPU and sports a 7-inch LCD screen, keyboard, touchpad, and built-in Wi-Fi, according to the report. However, the Alpha 680's 2-cell battery will last only two to four hours while surfing the Internet, much lower than the expected 12 hours.

… manufacturers attempt to drive the price of Netbooks to around $200 or less…

The Alpha 680 will be quickly forgotten of course. The big one will be the Google branded netbook debuting at $180.

Four Yorkshiremen – The Monty Python Poor skit

I’ve been looking for this one for a while, but turns out it was right in front of me, one of the first releases on my YouTube Monty Python feed ..

Excerpt

… "Oooooh, we used to dream of living in a corridor. It would have been a palace to us. We used to live in an old water tank on a rubbish [heap]. We got woken up every morning to having a load of rotting fish dumped all over us. House? Uh!"
"Oh, when I said house I meant a hole in the ground covered by a piece of twig. It was a house to us."
"We were evicted from our hole in the ground. We had to go and live in the lake!"
"You were lucky to have a lake! There were a hundred and fifty of us living in a small shoebox in the middle of the road."
"Cardboard box?" …

Interesting lesson on memory. I remembered one of the four lived in a river, but it was a lake. I also remembered someone brushing their teeth with barbed wire, but that’s a complete miss.

Wonderful.

Update: There are references to other versions of the skit in the YouTube comments. So maybe there was a river and barbed wire somewhere ...

When social conservatives can be helpful …

I’m not a fan of American pseudo-Christian marketarian fundamentalism. I do, however, sympathize with many of the priorities of parents who would call themselves social conservatives.

For example, we use their home schooling materials when our usually good but occasionally whacky public school fads fail our kids. We also appreciate their media reviews.

Consider Common Sense Media. They come across as pretty neutral, but I still suspect a social conservative undercurrent there. Where else, however, could I get a review like this one …

Hotel for Dogs Rating and Review For Kids and Families | Common Sense Media

… I work as an advocate for children who are coming from homes of Domestic Violence and I often take children to the movies when there is no school. After viewing the trailer the children decided it would be a fun movie to see (ages 8 & 12). I took them thinking it would be a silly pointless movie, only to find it was full of things that are all to real in my line of work. The children I had taken to the movies were recently removed from their mother and placed with grandparents, but have easily been those kids on the screen. I think the movie would have been great for "normal" happy children, but I wish somewhere in the previews I would have known the plot....now I know to check this site…

Exactly. By some miraculous intervention our #3 child (adopted) missed seeing this movie today. So, chances are, she won’t need emergency counseling. #2 (also adopted) was delighted by the film and appeared unfazed by a high-intensity emotional stress test for children with a history of personal tragedy. #1 is harder to read, I’ll have to watch how he does with it.

It’s not a bad film, even though they sure do yank the old adoption/abandonment levers that movie makers live for. It’s just a very tricky film for children with certain histories.

You don’t get that from typical movie review sites, but CSM has the key information.

Next time we’ll check CSM before we go.

Contrarian opinion – the bailout is working, and it’s relatively cheap

My iPhone Wall Street Journal app means I read the WSJ for free.

The “free” is important. The WSJ editorial pages are blithering madness assaulting civilization and reason. If I were to pay for the WSJ’s excellent news pages, I’d be funding WSJ editorial attacks on my children’s future. If I’m not paying for the editorials though, I can get the excellent journalism guilt-free.

So I came across a moderately contrarian opinion on the usual descriptions of the Geithner bailout (emphases mine):

Why the Wall Street Bailout is Working - David Weidner - WSJ.com

Anyone who takes tea with friends will tell you: The parties are painless. It's the gossip that hurts.

In the same way, today's antitax, antispending movements aren't the problem, it's the dangerous misconceptions they spread about the government response to the financial crisis.

Their argument -- that huge tax hikes are coming or have been implemented to pay off bailouts for banking fat cats -- betrays a lack of understanding of the government's approach to solving the financial crisis. When protesters or critics complain about the $10 trillion-plus spent on the Wall Street bailout, you can understand how their estimates of the number of protesters in the streets last week were slightly, well, inflated.

The truth: No one's paying new taxes directly related to the bailout. And most of the government rescue packages offered to the banks have gone untapped or are being repaid…

… Make no mistake, U.S. taxpayers are on the hook for a lot of money. The government has spent or expects to spend about $2.4 trillion in the next few months to keep the financial gears moving. It's a stunning amount of money made worse by rage-inducing missteps such as the bonus debacle at American International Group Inc. and the initial lack of direction for the Troubled Asset Relief Program…

… If the economy does recover within a year, we'll have spent a lot to rescue the financial system, but nowhere close to the 14-digit figure flogged by tea party protesters.

In fact, there's no way the government will spend that much, because many of the 26 bailout programs aren't being used much, according to Federal Reserve and Treasury Department statistics. For instance:

Banks have tapped the FDIC's Temporary Liquidity Guarantee Program for $297 billion so far. That's about 20% of the total $1.5 trillion allocated. This is the biggest of the government programs, and banks pay 0.5% to 1% interest for the right to borrow the money depending on how long they keep it.
During its first month, the Term Asset-Backed Securities Loan Facility, or TALF, has only financed $4.7 billion in consumer debt, far below the $1 trillion allocated. In addition, participation is declining with each new funding cycle.

The Money Market Guarantee Program, aimed at insuring money-market funds against losses, hasn't spent a dime. It covers up to $3.8 trillion in money-market debt. This program is actually making a small profit, because participating funds are required to pay a fee.

Other than the stimulus bill, the program with the biggest outlay so far is the Troubled Asset Relief Program, or TARP. More than $570 billion has been committed, but less than $400 billion has actually left the Treasury Department. Like most of these programs, it's unclear how much of this money will be repaid, but most banks say they're either ready or capable of giving it back. If not, they have to pay a 5% annual dividend to the government. In just the first three months of this year, the government has collected $2.52 billion in TARP interest.

You get the idea. Most of these programs were designed as backstops and as proof that the government stands behind the country's private financial system. The government is extending its own credit line to banks until the private sector can repair its own.

Recovery, when and if it occurs, will render many of these programs obsolete. The actual cost to taxpayers will be either negligible or drastically less than the most dire forecasts suggest.

Of course, taxpayers stand to lose more if the economy worsens and the financial system losses deepen further. It's not hard to imagine a scenario in which high unemployment leads to bigger loan defaults, setting off a domino effect of lower home prices and bank failures. Americans have $2 trillion in credit-card debt, and banks are holding that, too.

If that scenario comes to pass, financial companies could tap every dollar of the government's massive credit line.

The International Monetary Fund on Monday projected banks world-wide will need an additional $875 billion in capital by next year to get reserves to precrisis levels. That means most banks will need to raise cash through the public and private markets -- or, failing that, from the government.

But potential losses aren't the same as real ones.

Our national debt already stands at $11 trillion. Most of that debt was run up in the last eight years, when government spending outpaced declining tax revenues. The Iraq war is close to costing the nation $1 trillion. Hurricane Katrina cost us about $110 billion.

We ran up a huge tab for our kids well before the bailout, but it's unlikely that such an inconvenient fact will be the talk of the next tea party.

This is in line with the DeLong line, and somewhat opposed to Krugman (though his concern is not so much that money is being tossed out, as that it is not being spent where it should be).

I’ve seen comparison made elsewhere to the vastly smaller S&L bailout. It cost much more than was imagined early on, but much less than feared. My hope, prayer and hunch is that we’re in the same ballpark.

The vast deficits our children will inherit will not be the result of government bailouts, they will instead be driven by bad policies (Bush/GOP) and demographics (aging population).

Incidentally, the solution to the American demographic problem is just north of Minnesota. Canada has pioneered the exchange of Canadian citizenship privileges for the economic output of the world’s top producers. The US could do the same; we just need Obama to keep making America a more appealing place to live. Health care reform will help.

Saturday, April 25, 2009

Google Latitude, Profiles, and “friends”

Google Latitude inherits ideas from Google’s abandoned “Dodgeball” product. It lets you use your cell phone or computer to track people who’ve agreed to share location information. It plays some sort of role in Google’s chaotic/emergent/incoherent/diabolical social networking anti-twitter anti-facebook strategy.

Like Gmail SMS and Google Voice SMS and Google Talk messaging SMS it includes some … SMS, this time bundled with iGoogle (which I thought was iDying).

Ohh, and Google Profiles are in there too … somewhere (http://www.google.com/profiles/me). Profiles no longer have only numeric IDs like 113810027503326386174 [1], they can have vanity IDs too, like http://www.google.com/profiles/jfaughnan.

Phew.

Anyway, with Google Mobile | Latitude you can …

  • See where your friends are and what they are up to
  • Quickly contact them with SMS, IM, or a phone call
  • Control your location and who gets to see it

It’s designed for use on a mobile phone, but it can also work with an iGoogle gadget. I’m pretty sure it can be added to Gmail as well (where I’m more likely to use it) given the Gmail Lab widget insertion option.

On the computer I can manually specify my location ( the new IE Google toolbar will compute location for sites that have Wifi based on large databases of Wifi network locations [2]). On supported phones the location is dynamically update.

Emily and I share location now. Handy if her phone gets stolen! Her Blackberry Pearl doesn’t support GPS so it’s all cell tower triangulation.

On the other hand the iPhone still doesn’t support Latitude – months after we were told it was “coming soon”. Looks like the problem is a big one …

… Steve Lee, Product Manager for Google Latitude explained, "We have an iPhone version, working on that to make it available. One thing to note about iPhone version: The magical part of Latitude, even when it's in your pocket, it can report your location…It's not typical user behavior to pull out your phone out of your pocket and check in."

Lee continued, "On all those four platforms I mentioned, they allow applications from the background and multitask and report the location; and iPhone, that's not the case, and Apple just announced their 3.0 software and it appears that's still not the case. It's unfortunate for applications like Latitude…

I’ve no idea how this will all turn out. By the way, my money is on “incoherent” over “diabolical” for Google’s social strategy.

[1] Amazing how much stuff Google is breaking lately btw. The ID is still mine, but the original “sharing” URL is broken without even a polite error message. The current correct URL is http://www.google.com/profiles/113810027503326386174 vs. http://www.google.com/profiles/jfaughnan. Now that I’ve enabled the latter option searches on my true name (not John Gordon) include a link to my profile at the bottom of the results page.

[2] If that doesn’t unnerve you then either you have no imagination or you’ve already accepted the transparent society.